PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003789
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 258aa    MW: 29233.2 Da    PI: 7.0521
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003789genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.67.5e-3746145199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaCk++rrkCa+dC+lapyfp++++++f nvhklFG+++++k++++l ++  +++am+s+++++++ra+d v G+++++l+lq+q++ ++ael+ll
  Lus10003789  46 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNVHKLFGVRKITKIIENLATQAhKDEAMRSIIFQSDVRANDLVGGCYRIVLELQRQINYAQAELDLL 143
                  7************************************************777669****************************************987 PP

       DUF260  98 ke 99 
                   +
  Lus10003789 144 LH 145
                  65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8145147IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-3546142IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSSNTSPISI STTTTTNSNS NSSTNSNTKN NNNNISRIGN GGTTPACAAC KYQRRKCAPD  60
CILAPYFPHD RQRQFLNVHK LFGVRKITKI IENLATQAHK DEAMRSIIFQ SDVRANDLVG  120
GCYRIVLELQ RQINYAQAEL DLLLHHLAIY QQQQHHQNQH QQQDQTTIET NIDSAMMAAV  180
GCMDVYTDPM FLQFHCSLQQ QPQQQSDHEE QQHHHHHHHH HHHQNQQQQH HQLHGYAVED  240
TLQDGDSVNS WGMAAGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068972.13e-65PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW16e-49LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A067L9L13e-65A0A067L9L1_JATCU; Uncharacterized protein
STRINGPOPTR_0003s04520.11e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-46LOB domain-containing protein 22